There were 80 episodes total. They are listed here in the order in which they aired, and not necessarily in order of their episode numbers; the date following each episode's title is the date of the original airing of that episode.
| # | Title | Writer(s) | Director | Original airdate | Code
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| 01 <td>"Monkey See, Doggie Do / Mommy Fearest"</td><td align="center">Don Shank, Chris Savino</td><td align="center">Genndy Tartakovsky, Craig McCracken, John McIntyre</td><td align="center">1998-11-18</td><td align="center" id="pc002">002</td><tr><td colspan="6" valign="top" bgcolor="#ffffff"> </td></tr>
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| 02 <td>"Insect Inside / Powerpuff Bluff"</td><td align="center">Craig McCracken, Cindy Banks</td><td align="center">Genndy Tartakovsky, Craig McCracken</td><td align="center">1998-11-25</td><td align="center" id="pc001">001</td><tr><td colspan="6" valign="top" bgcolor="#ffffff"> </td></tr>
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| 03 <td>"Octi Evil / Geshundfight"</td><td align="center">Kevin Kaliher, Dan Krall</td><td align="center">Genndy Tartakovsky, Craig McCracken</td><td align="center">1998-12-02</td><td align="center" id="pc003">003</td><tr><td colspan="6" valign="top" bgcolor="#ffffff"> </td></tr>
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| 04 <td>"Buttercrush / Fuzzy Logic"</td><td align="center">Dave Smith, Michael Stern</td><td align="center">Genndy Tartakovsky, Craig McCracken</td><td align="center">1998-12-09</td><td align="center" id="pc004">004</td><tr><td colspan="6" valign="top" bgcolor="#ffffff"> </td></tr>
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| 05 <td>"Boogie Frights / Abracadaver"</td><td align="center">Paul Rudish, John McIntyre</td><td align="center">Genndy Tartakovsky, Craig McCracken, John McIntyre</td><td align="center">1998-12-16</td><td align="center" id="pc005">005</td><tr><td colspan="6" valign="top" bgcolor="#ffffff"> </td></tr>
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| 06 <td>"Telephonies / Tough Love"</td><td align="center">Clay Morrow, Chris Savino</td><td align="center">Genndy Tartakovsky, Craig McCracken</td><td align="center">1998-12-23</td><td align="center" id="pc006">006</td><tr><td colspan="6" valign="top" bgcolor="#ffffff"> </td></tr>
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| 07 <td>"Major Competition / Mr. Mojo's Rising"</td><td align="center">Cindy Morrow, Rob Renzetti</td><td align="center">Genndy Tartakovsky, Craig McCracken</td><td align="center">1999-01-06</td><td align="center" id="pc007">007</td><tr><td colspan="6" valign="top" bgcolor="#ffffff"> </td></tr>
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| 08 <td>"Paste Makes Waste / Ice Sore"</td><td align="center">Don Shank, Kevin Kaliher</td><td align="center">Genndy Tartakovsky, Craig McCracken, John McIntyre</td><td align="center">1999-01-13</td><td align="center" id="pc008">008</td><tr><td colspan="6" valign="top" bgcolor="#ffffff"> </td></tr>
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| 09 <td>"Bubblevicious / The Bare Facts"</td><td align="center">Mike Stern, Cindy Morrow</td><td align="center">Genndy Tartakovsky, Craig McCracken, John McIntyre</td><td align="center">1999-01-20</td><td align="center" id="pc009">009</td><tr><td colspan="6" valign="top" bgcolor="#ffffff"> </td></tr>
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| 10 <td>"Cat Man Do / Impeach Fuzz"</td><td align="center">Dave Smith, John McIntyre, Chris Savino</td><td align="center">Genndy Tartakovsky, Craig McCracken, John McIntyre</td><td align="center">1999-01-27</td><td align="center" id="pc010">010</td><tr><td colspan="6" valign="top" bgcolor="#ffffff"> </td></tr>
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| 11 <td>"Just Another Manic Mojo / Mime for a Change"</td><td align="center">Genndy Tartakovsky, Dave Smith</td><td align="center">Genndy Tartakovsky, Craig McCracken</td><td align="center">1999-02-03</td><td align="center" id="pc011">011</td><tr><td colspan="6" valign="top" bgcolor="#ffffff"> </td></tr>
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| 12 <td>"The Rowdyruff Boys"</td><td align="center">Paul Rudish, Clay Morrow</td><td align="center">Genndy Tartakovsky, Craig McCracken</td><td align="center">1999-04-07</td><td align="center" id="pc012">012</td><tr><td colspan="6" valign="top" bgcolor="#ffffff">Mojo Jojo creates the Rowdyruff Boys. </td></tr>
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| 13 <td>"Uh Oh Dynamo"</td><td align="center">Don Shank</td><td align="center">Genndy Tartakovsky, Craig McCracken</td><td align="center">1999-05-27</td><td align="center" id="pc013">013</td><tr><td colspan="6" valign="top" bgcolor="#ffffff"> </td></tr>
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| # | Title | Writer(s) | Director | Original airdate | Code
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| 14 <td>"Stuck Up, Up, and Away / Schoolhouse Rocked"</td><td align="center">Paul Rudish, Cindy Morrow</td><td align="center">John McIntyre, Craig McCracken</td><td align="center">1999-06-25</td><td align="center" id="pc014">014</td><tr><td colspan="6" valign="top" bgcolor="#ffffff"> </td></tr>
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| 15 <td>"Collect Her / Supper Villain"</td><td align="center">Chris Savino, Dave Smith</td><td align="center">John McIntyre, Craig McCracken, Genndy Tartakovsky</td><td align="center">1999-08-06</td><td align="center" id="pc015">015</td><tr><td colspan="6" valign="top" bgcolor="#ffffff"> </td></tr>
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| 16 <td>"Birthday Bash / Too Pooped to Puff"</td><td align="center">Clay Morrow, Cindy Morrow</td><td align="center">Genndy Tartakovsky, Craig McCracken, Randy Myers</td><td align="center">1999-08-20</td><td align="center" id="pc016">016</td><tr><td colspan="6" valign="top" bgcolor="#ffffff"> </td></tr>
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| 17 <td>"Beat Your Greens / Down 'n Dirty"</td><td align="center">Paul Rudish, Charlie Bean</td><td align="center">Randy Myers, Craig McCracken, John McIntyre</td><td align="center">1999-09-10</td><td align="center" id="pc017">017</td><tr><td colspan="6" valign="top" bgcolor="#ffffff"> </td></tr>
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| 18 <td>"Dream Scheme / You Snooze, You Lose"</td><td align="center">Chris Savino, Lynne Naylor</td><td align="center">John McIntyre, Craig McCracken</td><td align="center">1999-09-25</td><td align="center" id="pc018">018</td><tr><td colspan="6" valign="top" bgcolor="#ffffff"> </td></tr>
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| 19 <td>"Slave the Day / Los Dos Mojos"</td><td align="center">Genndy Tartakovsky, Chris Savino</td><td align="center">Genndy Tartakovsky, Craig McCracken</td><td align="center">1999-10-08</td><td align="center" id="pc019">019</td><tr><td colspan="6" valign="top" bgcolor="#ffffff"> </td></tr>
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| 20 <td>"A Very Special Blossom / Daylight Savings"</td><td align="center">Lou Romano, Chris Savino</td><td align="center">Randy Myers, Craig McCracken, John McIntyre</td><td align="center">1999-11-26</td><td align="center" id="pc020">020</td><tr><td colspan="6" valign="top" bgcolor="#ffffff"> </td></tr>
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| 21 <td>"Mo Job / Pet Feud"</td><td align="center">Don Shank, Lynne Naylor</td><td align="center">Genndy Tartakovsky, Craig McCracken</td><td align="center">2000-02-13</td><td align="center" id="pc021">021</td><tr><td colspan="6" valign="top" bgcolor="#ffffff"> </td></tr>
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| 22 <td>"Imaginary Fiend / Cootie Gras"</td><td align="center">Cindy Morrow, Charlie Bean</td><td align="center">Randy Myers, Craig McCracken, John McIntyre</td><td align="center">2000-03-17</td><td align="center" id="pc022">022</td><tr><td colspan="6" valign="top" bgcolor="#ffffff"> </td></tr>
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| 23 <td>"The Powerpuff Girls' Best Rainy Day Adventure Ever / Just Desserts"</td><td align="center">Dave Smith</td><td align="center">Randy Myers, Craig McCracken</td><td align="center">2000-04-28</td><td align="center" id="pc023">023</td><tr><td colspan="6" valign="top" bgcolor="#ffffff"> </td></tr>
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| 24 <td>"Twisted Sister / Cover Up"</td><td align="center">Clay Morrow, Chris Reccardi</td><td align="center">John McIntyre, Craig McCracken, Genndy Tartakovsky</td><td align="center">2000-05-26</td><td align="center" id="pc024">024</td><tr><td colspan="6" valign="top" bgcolor="#ffffff"> </td></tr>
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| 25 <td>"Speed Demon / Mojo Jonesin'"</td><td align="center">Charlie Bean, Kevin Kaliher</td><td align="center">Randy Myers, Craig McCracken, John McIntyre</td><td align="center">2000-06-02</td><td align="center" id="pc025">025</td><tr><td colspan="6" valign="top" bgcolor="#ffffff"> </td></tr>
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| 26 <td>"Something's a Ms. / Slumbering with the Enemy"</td><td align="center">Chris Savino, Lynne Naylor-Reccardi</td><td align="center">Randy Myers, Craig McCracken</td><td align="center">2000-06-30</td><td align="center" id="pc026">026</td><tr><td colspan="6" valign="top" bgcolor="#ffffff"> </td></tr>
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| # | Title | Writer(s) | Director | Original airdate | Code
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| 27 <td>"Fallen Arches / The Mane Event"</td><td align="center">Dave Smith, Lynne Naylor-Reccardi</td><td align="center">John McIntyre, Genndy Tartakovsky, Craig McCracken</td><td align="center">2000-07-28</td><td align="center" id="pc027">027</td><tr><td colspan="6" valign="top" bgcolor="#ffffff"> </td></tr>
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| 28 <td>"Town and Out / Child Fearing"</td><td align="center">Charlie Bean, Chris Reccardi</td><td align="center">John McIntyre, Craig McCracken, Randy Myers</td><td align="center">2000-08-18</td><td align="center" id="pc028">028</td><tr><td colspan="6" valign="top" bgcolor="#ffffff"> </td></tr>
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| 29 <td>"Criss Cross Crisis"</td><td align="center">Don Shank</td><td align="center">Genndy Tartakovsky, Craig McCracken</td><td align="center">2000-09-08</td><td align="center" id="pc029">029</td><tr><td colspan="6" valign="top" bgcolor="#ffffff"> </td></tr>
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| 30 <td>"Bubblevision / Bought and Scold"</td><td align="center">Kevin Kaliher, Cindy Morrow, Paul Rudish</td><td align="center">Genndy Tartakovsky, Craig McCracken, John McIntyre</td><td align="center">2000-09-15</td><td align="center" id="pc030">030</td><tr><td colspan="6" valign="top" bgcolor="#ffffff"> </td></tr>
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| 31 <td>"Gettin' Twiggy With It / Cop Out"</td><td align="center">Chris Reccardi, Kevin Kaliher</td><td align="center">Craig McCracken, John McIntyre, Robert Alvarez</td><td align="center">2000-09-22</td><td align="center" id="pc031">031</td><tr><td colspan="6" valign="top" bgcolor="#ffffff"> </td></tr>
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| 32 <td>"Three Girls and a Monster / Monkey See, Doggie Two"</td><td align="center">Kevin Kaliher, Chris Savino, Chris Reccardi, Don Shank</td><td align="center">Randy Myers, Craig McCracken, Genndy Tartakovsky, Robert Alvarez</td><td align="center">2000-10-06</td><td align="center" id="pc033">033</td><tr><td colspan="6" valign="top" bgcolor="#ffffff"> </td></tr>
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| 33 <td>"Jewel of the Aisle / Super Zeroes"</td><td align="center">Dave Smith, Clay Morrow</td><td align="center">Randy Myers, Craig McCracken, John McIntyre</td><td align="center">2000-10-20</td><td align="center" id="pc032">032</td><tr><td colspan="6" valign="top" bgcolor="#ffffff"> </td></tr>
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| 34 <td>"Candy is Dandy / Catastrophe"</td><td align="center">Clay Morrow, Steven Fonti</td><td align="center">Randy Myers, Craig McCracken, John McIntyre</td><td align="center">2000-11-10</td><td align="center" id="pc034">034</td><tr><td colspan="6" valign="top" bgcolor="#ffffff"> </td></tr>
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| 35 <td>"Hot Air Buffoon / Ploys R' Us"</td><td align="center">Mike Stern, Chris Savino, Cindy Morrow</td><td align="center">John McIntyre, Craig McCracken, Robert Alvarez</td><td align="center">2000-12-01</td><td align="center" id="pc035">035</td><tr><td colspan="6" valign="top" bgcolor="#ffffff"> </td></tr>
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| 36 <td>"The Headsuckers Moxy / Equal Fights"</td><td align="center">Lynne Naylor-Reccardi, Lauren Faust</td><td align="center">Randy Myers, Craig McCracken</td><td align="center">2001-01-05</td><td align="center" id="pc038">038</td><tr><td colspan="6" valign="top" bgcolor="#ffffff"> </td></tr>
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| 37 <td>"Powerprof."</td><td align="center">Lauren Faust</td><td align="center">Randy Myers, Craig McCracken</td><td align="center">2001-02-09</td><td align="center" id="pc037">037</td><tr><td colspan="6" valign="top" bgcolor="#ffffff"> </td></tr>
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| 38 <td>"Moral Decay / Meet the Beat-Alls"</td><td align="center">Craig McCracken, Lauren Faust</td><td align="center">Robert Alvarez, Craig McCracken, John McIntyre</td><td align="center">2001-02-09</td><td align="center" id="pc039">039</td><tr><td colspan="6" valign="top" bgcolor="#ffffff"> </td></tr>
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| 39 <td>"Helter Shelter / Power Lunch"</td><td align="center">Cindy Morrow, Chris Savino, Genndy Tartakovsky</td><td align="center">Craig McCracken, John McIntyre</td><td align="center">2001-04-03</td><td align="center" id="pc036">036</td><tr><td colspan="6" valign="top" bgcolor="#ffffff"> </td></tr>
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| #
| Airdate
| Title
| Overview
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| 40
| April 20, 2001
| Film Flam
| Director Bernie Bernstien wants to make a movie of the Powerpuff Girls.
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| 41
| April 27, 2001
| All Chalked Up
| After Buttercup destroys her chalk, Bubbles is offered a new set by a butterfly (Him in disguise).
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| 42
| May 4, 2001
| Get Back Jojo
| The Girls have to travel back to the past to keep Mojo Jojo from preventing their creation.
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| 43
| June 8, 2002
| Superfriends
| The Powerpuff Girls have a new neighbor: Robin Synder.
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| 44
| June 15, 2002
| Members Only
| The Girls try to join a superhero orginazation, but must prove themselves to do so.
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| 45
| June 21, 2002
| Him Diddle Riddle
| Him gives the Girls a set of tasks. If they fail, "The Professor will PAY!"
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| 46
| June 22, 2002
| Nano of the North
| Nanobots-tiny microscopic organisms- have come to Townsville to eat all the carbon in it.
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| 47
| June 28, 2002
| Forced Kin
| Mojo has to team up with the Powerpuff Girls to save the day from a menace that counters all thier methods.
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| 48
| July 5, 2002
| Stray Bullet
| Bubbles saves a squirrel by feeding it Chemical X, turning it into Bullet, the Powerpuff Squirrel.
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| 49
| July 12, 2002
| Knock It Off
| Dick Hardly creates his own PPGs for mass production.
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| #
| Airdate
| Title
| Overview
| Notes/Trivia
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| 50
| December 6, 2002
| Keen on Keane / Not So Awesome Blossom
| The Professor and Miss Keane go out on a date
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| 51
| December 13, 2002
| Power-Noia
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| 52
| September 5, 2003
| Monstra-City / Shut the Pup Up
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| 53
| September 12, 2003
| Toast of the Town / Divide and Conquer
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| 54
| September 19, 2003
| Burglar Alarmed / Shotgun Wedding
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| 55
| September 26, 2003
| Save Mojo / Substitute Creature
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| 56
| November 6, 2003
| The Boys Are Back in Town
| The Rowdyruff Boys return thanks to the work of Him.
| Butch's new hairstyle is akin to that of Vegeta.
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| 57
| November 13, 2003
| Pee Pee G's / Boys Toys
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| 58
| November 25, 2003
| Seed No Evil / City of Clipsville
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| 59
| January 9, 2004
| Lying Around the House / Bubble Boy
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| 60
| January 16, 2004
| Documentary / Girls Gone Mild
| A film maker makes a documentary on the Powerpuff Girls.
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| 61
| April 2, 2004
| Curses / Bang For Your Buck
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| 62
| April 9, 2004
| Silent Treatment / Sweet 'N Sour
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| 63
| April 16, 2004
| Prime Mates / Coupe D'Etat
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| 64
| April 23, 2004
| Makes Zen to Me / Say Uncle
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| 65
| April 30, 2004
| Reeking Havoc / Live and Let Dynamo
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| The title "Live and Let Dynamo" is a play on the title of the James Bond film, Live and Let Die.
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| 66
| May 7, 2004
| Mo' Linguish / Oops, I Did It Again
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| Professor wonders what life would be like if he hadn't put Chemical X in the "perfect gir" formula.
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| 67
| May 14, 2004
| A Made Up Story
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